../../tmp/servers/virsirnadb/397826789
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap 


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21831tccagcagtattctaagac19
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence
6767...................6785100
AB073912.1 Swine hepatitis E virus genomic RNA, complete genome
6757...................6775100
AB080575.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JI4
6704...................6722100
AB074917.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JKK-S6757...................6775100
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC2206754...................6772100
AB222183.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJTS1
6757...................6775100
AB222183.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJTS1
2980..........aa..g.t._296373
AB222184.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJYG1
6757...................6775100
AB246676.1 Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1
6757...................6775100
AB220972.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB220975.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB220976.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB220977.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB220978.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB220979.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773...................6791100
AB236320.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMNG-Oki02C
6757...................6775100
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome
6775...................6793100
AB301710.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6757...................6775100
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6737...................6755100
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6737...................6755100
AB362843.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6757...................6775100
AB362842.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6757...................6775100
AB362841.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p6757...................6775100
AB362840.1 Hepatitis E virus genomic RNA, complete genome, isolate: 114d/A549
6757...................6775100
AB362839.1 Hepatitis E virus genomic RNA, complete genome, isolate: 118d/Alex
6757...................6775100
AB425831.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6757...................6775100
AB425830.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6757...................6775100
AB291959.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K6733...................6751100
AB291965.1 Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C
6773...................6791100
AB291966.1 Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa046773...................6791100
AB291967.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH066773...................6791100
AB291968.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C
6773...................6791100
AB437316.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6757...................6775100
AB437319.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6399...................6417100
FJ527832.2 Hepatitis E virus isolate SAAS-JDY5, complete genome
6755...................6773100
AB437317.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6758...................6776100
AB437318.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 6757...................6775100
GU206559.1 Hepatitis E virus isolate bjsw1, complete genome
6773...................6791100
GU361892.1 Swine hepatitis E virus strain hb-3, complete genome
6773...................6791100
AB591733.1 Hepatitis E virus genomic RNA, complete genome, strain: JMNG26-Oki08
6757...................6775100
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome
6732.............a.....675094
M80581.1HPEA Hepatitis E Virus, complete cds
6702.............a.....672094
L25595.1HPEORFS Hepatitis E virus ORFs 1-3
6731.............a.....674994
L25547.1HPEGENA Hepatitis E virus unknown genes
6731.............a.....674994
X98292.1 Hepatitis E virus, complete genome
6731.............a.....674994
D11093.1HPEUIGH Hepatitis E virus complete genome sequence
6732............g......675094
AF060669.1 Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps6782.t.................680094
AP003430.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRA1
6758.t.................677694
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome
6730.............a.....674894
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome
6730.............a.....674894
AB074918.2 Hepatitis E virus genomic RNA, complete genome, isolate: JKN-Sap
6775.t.................679394
AF459438.1 Hepatitis E virus from North India, complete genome
6729.............g.....674794
AB074920.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JMY-H6759.t.................677794
AB089824.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA10
6775.t.................679394
AB089824.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA10
2320.........c.._______230957
AB091394.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JJT-K6739.......a...........675794
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S6757..........c........677594
AF455784.1 Hepatitis E virus strain Osh 205, complete genome
6742.......a...........676094
AY230202.1 Hepatitis E virus from Morocco, complete genome
6730.............g.....674894
AB097811.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13-6773..........c........679194
AB097812.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1
6773..........c........679194
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4
6773..........c........679194
AY594199.1 Swine hepatitis E virus strain swCH25, complete genome
6781.t.................679994
AB189070.1 Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo046758.t.................677694
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER6741.t.................675994
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6732.t.................675094
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6732.t.................675094
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6732.t.................675094
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy6732.t.................675094
AY723745.1 Hepatitis E virus isolate IND-SW-00-01, complete genome
6773................a..679194
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH026774..........c........679294
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C
6774..........c........679294
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C
6774..........c........679294
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L
6748..........c........676694
AB197673.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai986771.............c.....678994
AB220971.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773..........c........679194
AB220973.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773.t.................679194
AB253420.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2
6748....a..............676694
DQ450072.1 Hepatitis E virus isolate swCH31, complete genome
6770.t.................678894
AB248521.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ8-5
6760.t.................677894
AB248522.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ12-4
6760.t.................677894
AB248522.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ12-4
249..g........._______26057
EF077630.1 Hepatitis E virus isolate Ch-S-1, complete genome
6770.............c.....678894
DQ279091.2 Swine hepatitis E virus isolate swDQ, complete genome
6768..........c........678694
EU366959.1 Hepatitis E virus isolate swGX32, complete genome
6774.............c.....679294
AB369687.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6740..........c........675894
AB369690.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E6759.t.................677794
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome
6767.t.................678594
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome
249..g........._______26057
AB443623.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6732................a..675094
AB443624.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6732................a..675094
AB443626.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6732................a..675094
AB291951.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-S6737................a..675594
AB291952.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIY-T6737................a..675594
AB291953.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSO-O6737................a..675594
AB291954.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSS-O6737................a..675594
AB291955.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSW-K6737................a..675594
AB291956.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYM-T6737................a..675594
AB291957.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JYU-O6737................a..675594
AB291960.1 Hepatitis E virus genomic RNA, complete genome, isolate: JTK-Kag06C
6758................a..677694
AB291963.1 Hepatitis E virus genomic RNA, complete genome, isolate: JRM-Toy05C
6757..........c........677594
AB291964.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C
6768....a..............678694
EU723512.2 Swine hepatitis E virus isolate SW626, complete genome
6760.............c.....677894
AB481226.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E6760.t.................677894
AB481227.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-H6773..........c........679194
AB481228.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-M6775.t.................679394
AB481229.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJR-P6757..........c........677594
AB480825.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773.t.................679194
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome
6773................a..679194
GU119960.2 Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome
6770.............c.....678894
HQ709170.1 Hepatitis E virus strain Kernow-C1, complete genome
6944.t.................696294
HQ389543.1 Hepatitis E virus strain Kernow-C1, complete genome
6773.t.................679194
HQ389544.1 Hepatitis E virus strain Kernow-C1, complete genome
6944.t.................696294
HQ634346.1 Hepatitis E virus strain TW6196E, complete genome
6771.............c.....678994
NC_001434.1 Hepatitis E virus, complete genome
6709_............a.....672689
M94177.1HPCEGENOM Hepataitis E virus complete genome
6733_............a.....675089
AF076239.3 Hepatitis E virus from Hyderabad, India, complete genome
6732.............g...._674989
AY115488.1 Swine hepatitis E virus strain Arkell, complete genome
6774_...............a..679189
HM439284.1 Hepatitis E virus isolate EChZ20, complete genome
6764.t................_678189
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete6732..........c..g.....675089
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3
6732..........c..g.....675089
AF051830.1 Hepatitis E virus strain TK15/92, complete genome
6732..........c..g.....675089
AF082843.1 Swine hepatitis E virus nonstructural polyprotein and putative capsid6756.t...........a.....677489
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct6681..........c..g.....669989
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 6691.t...........g.....670989
AY575857.1 Hepatitis E virus clone pSHEV-1, complete genome
6773.t...........a.....679189
AY575858.1 Hepatitis E virus clone pSHEV-2, complete genome
6773.t...........a.....679189
AY575859.1 Hepatitis E virus clone pSHEV-3, complete genome
6773.t...........a.....679189
AB197674.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYI-ChiSai016770.t...........c.....678889
AB222182.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1
6757..........c..c.....677589
AB220974.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 6773.t..............a..679189
DQ459342.1 Hepatitis E virus from India, complete genome
6732..........c..g.....675089
EU360977.1 Hepatitis E virus isolate swX07-E1, complete genome
6764..........c.....a..678289
EU375463.1 Hepatitis E virus isolate Thai-swHEV07, complete genome
6761..........c..c.....677989
EU723513.1 Swine hepatitis E virus isolate SW627, complete genome
6735..........c..c.....675389
EU723515.1 Swine hepatitis E virus isolate SWP7, complete genome
6822..........c..c.....684089
EU723515.1 Swine hepatitis E virus isolate SWP7, complete genome
7191_________..........718252
EU723516.1 Swine hepatitis E virus isolate SWP8, complete genome
6822..........c..c.....684089
EU723516.1 Swine hepatitis E virus isolate SWP8, complete genome
7191_________..........718252
FJ457024.1 Hepatitis E virus isolate HEV-H from India, complete genome
6732..........c..g.....675089
AB443625.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6732....a...........a..675089
AB443627.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JIO-s6732....a...........a..675089
AB291961.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C
6761..........c..c.....677989
AB291962.1 Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C
6757.t...........c.....677589
EU723514.2 Swine hepatitis E virus isolate SWP6, complete genome
6847..........c..c.....686589
EU723514.2 Swine hepatitis E virus isolate SWP6, complete genome
7216_________..........720752
FJ956757.1 Hepatitis E virus isolate HEV_RKI, complete genome
6772..........c..c.....679089
FJ998008.1 Swine hepatitis E virus isolate BB02, complete genome
6732..........c.....a..675089
GU119961.3 Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome
6774.t..............a..679289
D10330.1HPEHEV Hepatitis E virus genomic RNA
6732..........cc.g.....675084
FJ705359.1 Hepatitis E virus isolate wbGER27, complete genome
6757..........c..c..a..677584
FJ906895.1 Hepatitis E virus isolate GDC9, complete genome
253___.........g..g.g.26868
    
                             

                         

                       

                    

                

                

                    

                    

                    

                    

                    

                        

                            
Bioinformatics centre
Institute of Microbial Technology, Chandigarh, India